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plone4bio 1.0 (Release candidate)
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This is not a final release. Experimental releases should only be used for testing and development. Do not use these on production sites, and make sure you have proper backups before installing.
For additional information about this project, please visit the
project page.
Available downloads
Release Notes
| Tested with | Plone 3.0 |
|---|---|
| State | Release candidate |
| License | GPL |
| Release Manager | Mauro Amico |
| Released | 2008/02/01 |
The plone4bio package provides the possibility to add a new content type, called sequence, than can be either written by hand or imported from a FASTA file, and to apply to that sequence a program, called predictor,
that gives a back a plot of predicted probabilities for the sequence to
have a given property (the property that the predictor tries to
determine).
A predictor can try to assess if a protein sequence is trans-membrane, whether a signal peptide exists, and so on.
plone4bio.base
The plone4bio.base is a package that defines a skeleton predictor: deriving from that it is possible to integrate any other application and visualize all the results together.
biocomp.pscoils
Is an example predictor, incapsulating the pscoils algorithm by Fariselli et al. available at http://www.biocomp.unibo.it/
It
is intended both as an example on how to integrate one's own predictor
in the plone4bio framework and as a predictor for coil-coil ready to be
used.
Change log
First public release by BioDec.
